Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize.
Identifieur interne : 000484 ( Main/Exploration ); précédent : 000483; suivant : 000485Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize.
Auteurs : Ying Hu [États-Unis] ; Jie Ren [États-Unis] ; Zhao Peng [États-Unis] ; Arnoldo A. Umana [États-Unis] ; Ha Le [États-Unis] ; Tatiana Danilova [États-Unis] ; Junjie Fu [République populaire de Chine] ; Haiyan Wang [États-Unis] ; Alison Robertson [États-Unis] ; Scot H. Hulbert [États-Unis] ; Frank F. White [États-Unis] ; Sanzhen Liu [États-Unis]Source :
- Frontiers in plant science [ 1664-462X ] ; 2018.
Abstract
Goss's wilt (GW) of maize is caused by the Gram-positive bacterium Clavibacter michiganensis subsp. nebraskensis (Cmn) and has spread in recent years throughout the Great Plains, posing a threat to production. The genetic basis of plant resistance is unknown. Here, a simple method for quantifying disease symptoms was developed and used to select cohorts of highly resistant and highly susceptible lines known as extreme phenotypes (XP). Copy number variation (CNV) analyses using whole genome sequences of bulked XP revealed 141 genes containing CNV between the two XP groups. The CNV genes include the previously identified common rust resistant locus rp1. Multiple Rp1 accessions with distinct rp1 haplotypes in an otherwise susceptible accession exhibited hypersensitive responses upon inoculation. GW provides an excellent system for the genetic dissection of diseases caused by closely related subspecies of C. michiganesis. Further work will facilitate breeding strategies to control GW and provide needed insight into the resistance mechanism of important related diseases such as bacterial canker of tomato and bacterial ring rot of potato.
DOI: 10.3389/fpls.2018.00110
PubMed: 29479358
PubMed Central: PMC5812337
Affiliations:
- République populaire de Chine, États-Unis
- Floride, Iowa, Kansas, Washington (État)
- Ames (Iowa), Pékin
- Université d'État de l'Iowa
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Umana</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Le, Ha" sort="Le, Ha" uniqKey="Le H" first="Ha" last="Le">Ha Le</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Danilova, Tatiana" sort="Danilova, Tatiana" uniqKey="Danilova T" first="Tatiana" last="Danilova">Tatiana Danilova</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Fu, Junjie" sort="Fu, Junjie" uniqKey="Fu J" first="Junjie" last="Fu">Junjie Fu</name><affiliation wicri:level="3"><nlm:affiliation>Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Haiyan" sort="Wang, Haiyan" uniqKey="Wang H" first="Haiyan" last="Wang">Haiyan Wang</name><affiliation wicri:level="2"><nlm:affiliation>Department of Statistics, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Statistics, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Robertson, Alison" sort="Robertson, Alison" uniqKey="Robertson A" first="Alison" last="Robertson">Alison Robertson</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA</wicri:regionArea><placeName><region type="state">Iowa</region><settlement type="city">Ames (Iowa)</settlement></placeName><orgName type="university">Université d'État de l'Iowa</orgName></affiliation></author><author><name sortKey="Hulbert, Scot H" sort="Hulbert, Scot H" uniqKey="Hulbert S" first="Scot H" last="Hulbert">Scot H. Hulbert</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Washington State University, Pullman, WA, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Washington State University, Pullman, WA</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="White, Frank F" sort="White, Frank F" uniqKey="White F" first="Frank F" last="White">Frank F. White</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of Florida, Gainesville, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Liu, Sanzhen" sort="Liu, Sanzhen" uniqKey="Liu S" first="Sanzhen" last="Liu">Sanzhen Liu</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Kansas State University, Manhattan, KS</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Goss's wilt (GW) of maize is caused by the Gram-positive bacterium <i>Clavibacter michiganensis</i> subsp. <i>nebraskensis</i> (Cmn) and has spread in recent years throughout the Great Plains, posing a threat to production. The genetic basis of plant resistance is unknown. Here, a simple method for quantifying disease symptoms was developed and used to select cohorts of highly resistant and highly susceptible lines known as extreme phenotypes (XP). Copy number variation (CNV) analyses using whole genome sequences of bulked XP revealed 141 genes containing CNV between the two XP groups. The CNV genes include the previously identified common rust resistant locus <i>rp1</i>. Multiple <i>Rp1</i> accessions with distinct <i>rp1</i> haplotypes in an otherwise susceptible accession exhibited hypersensitive responses upon inoculation. GW provides an excellent system for the genetic dissection of diseases caused by closely related subspecies of <i>C. michiganesis</i>. Further work will facilitate breeding strategies to control GW and provide needed insight into the resistance mechanism of important related diseases such as bacterial canker of tomato and bacterial ring rot of potato.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29479358</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>9</Volume><PubDate><Year>2018</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of <i>rp1</i> with Resistance to Goss's Wilt of Maize.</ArticleTitle><Pagination><MedlinePgn>110</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2018.00110</ELocationID><Abstract><AbstractText>Goss's wilt (GW) of maize is caused by the Gram-positive bacterium <i>Clavibacter michiganensis</i> subsp. <i>nebraskensis</i> (Cmn) and has spread in recent years throughout the Great Plains, posing a threat to production. The genetic basis of plant resistance is unknown. Here, a simple method for quantifying disease symptoms was developed and used to select cohorts of highly resistant and highly susceptible lines known as extreme phenotypes (XP). Copy number variation (CNV) analyses using whole genome sequences of bulked XP revealed 141 genes containing CNV between the two XP groups. The CNV genes include the previously identified common rust resistant locus <i>rp1</i>. Multiple <i>Rp1</i> accessions with distinct <i>rp1</i> haplotypes in an otherwise susceptible accession exhibited hypersensitive responses upon inoculation. GW provides an excellent system for the genetic dissection of diseases caused by closely related subspecies of <i>C. michiganesis</i>. Further work will facilitate breeding strategies to control GW and provide needed insight into the resistance mechanism of important related diseases such as bacterial canker of tomato and bacterial ring rot of potato.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Ying</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Jie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peng</LastName><ForeName>Zhao</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Umana</LastName><ForeName>Arnoldo A</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Le</LastName><ForeName>Ha</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Danilova</LastName><ForeName>Tatiana</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Junjie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Haiyan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Statistics, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robertson</LastName><ForeName>Alison</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hulbert</LastName><ForeName>Scot H</ForeName><Initials>SH</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Washington State University, Pullman, WA, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>White</LastName><ForeName>Frank F</ForeName><Initials>FF</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, FL, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Sanzhen</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Kansas State University, Manhattan, KS, United States.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>02</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Zea mays</Keyword><Keyword MajorTopicYN="N">copy number variation</Keyword><Keyword MajorTopicYN="N">goss's wilt</Keyword><Keyword MajorTopicYN="N">resistance</Keyword><Keyword 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Hulbert</name><name sortKey="Le, Ha" sort="Le, Ha" uniqKey="Le H" first="Ha" last="Le">Ha Le</name><name sortKey="Liu, Sanzhen" sort="Liu, Sanzhen" uniqKey="Liu S" first="Sanzhen" last="Liu">Sanzhen Liu</name><name sortKey="Peng, Zhao" sort="Peng, Zhao" uniqKey="Peng Z" first="Zhao" last="Peng">Zhao Peng</name><name sortKey="Ren, Jie" sort="Ren, Jie" uniqKey="Ren J" first="Jie" last="Ren">Jie Ren</name><name sortKey="Robertson, Alison" sort="Robertson, Alison" uniqKey="Robertson A" first="Alison" last="Robertson">Alison Robertson</name><name sortKey="Umana, Arnoldo A" sort="Umana, Arnoldo A" uniqKey="Umana A" first="Arnoldo A" last="Umana">Arnoldo A. Umana</name><name sortKey="Wang, Haiyan" sort="Wang, Haiyan" uniqKey="Wang H" first="Haiyan" last="Wang">Haiyan Wang</name><name sortKey="White, Frank F" sort="White, Frank F" uniqKey="White F" first="Frank F" last="White">Frank F. White</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Fu, Junjie" sort="Fu, Junjie" uniqKey="Fu J" first="Junjie" last="Fu">Junjie Fu</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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